UVa Course Catalog (Unofficial, Lou's List)
Catalog of Courses for Biology    
Class Schedules Index Course Catalogs Index Class Search Page
These pages present data mined from the University of Virginia's student information system (SIS). I hope that you will find them useful. — Lou Bloomfield, Department of Physics
Biology
BIOL 1050Genetics for an Informed Citizen (3.00)
Genetics and Genomics form the basis for much of modern biology and the future of medical practice. A basic understanding of them is important for people to be able to evaluate the science behind many issues both public and private. Genetics and Genomics and some of the ways they confront and inform modern life will be covered in a way that is accessible to non-scientists.
BIOL 1060Principles of Nutrition (3.00)
Offered
Spring 2012
Topics include the chemical composition of the body; the molecular structure and function of different kinds of nutrients required by humans; the metabolic processes that transform food into energy and the chemical blocks for the creation and renewal of cellular structures; and the basic scientific principle of energy balance that determines weight gain or loss as governed by diet and exercise.
BIOL 1210Human Biology and Disease (3.00)
Introduces basic biological principles as illustrated in the human organism. Emphasizes the disruption of normal functions by disease either inherited or acquired.
BIOL 1559New Course in Biology (1.00 - 4.00)
New course in the subject of Biology.
BIOL 2010Introduction to Biology: Cell Biology and Genetics (3.00)
Intensive introduction to modern biology designed for natural science majors. Biological structure and function at various levels of organization, cell biology, genetics, development and evolution are covered. This course is required for all biology majors and is a prerequisite for most upper-level biology courses. Lectures and recitation/review.
BIOL 2020Introduction to Biology: Organismal and Evolutionary Biology (3.00)
Offered
Spring 2012
Intensive introduction to modern biology designed for natural science majors. Biological structure and function at various levels of organization, cell biology, genetics, development and evolution are covered. This course are required for all biology majors and is a prerequisite for most upper-level biology courses. Lectures and recitation/review. Prerequisite: BIOL 2010.
BIOL 2030Introduction to Biology: Cell Biology and Genetics Laboratory (2.00)
Laboratory exercises in introductory biology to illustrate experimental techniques and strategies used to elucidate biological concepts. Corequisite: May be taken independently (labs are not sequenced), or in conjunction with BIOL 2010.
BIOL 2040Introduction to Biology: Organismal and Evolutionary Biology Laboratory (2.00)
Offered
Spring 2012
Studies life forms, from simple to complex organization, demonstrating the unique properties of living organisms. Corequisite: May be taken independently (labs are not sequenced), or in conjunction with BIOL 2010, 2020.
BIOL 2060Human Physiology and Anatomy I (3.00)
Offered
Spring 2012
Includes basic information regarding the chemistry and organization of living matter needed to understand cellular, tissue, and organ function. The morphology and physiological functions of the integumentary, skeletal, muscular, and neurosensory organ systems will also be covered. Designed as a basic course for students in the allied health sciences.
BIOL 2061Human Physiology and Anatomy I Laboratory (1.00)
Offered
Spring 2012
Optional laboratory class to accompany BIOL 2060. Includes simple anatomical, physiological and chemical exercises, clinical exercises, dissections, and microscopic examination of tissues that demonstrate and supplement topics covered in the lecture.
BIOL 2070Human Physiology and Anatomy II (3.00)
Covers the morphology and physiology for the cardiovascular, lymphatic, immune, endocrine, digestive, respiratory, excretory and reproductive organ systems. Designed as a basic course for students in the allied health sciences.
BIOL 2071Human Physiology and Anatomy II Laboratory (1.00)
Optional laboratory class to accompany BIOL 2070. Includes simple anatomical, physiological, and chemical exercises, clinical exercises, dissections, and microscopic examination of tissues that demonstrate and supplement topics covered in the lecture.
BIOL 2559New Course in Biology (1.00 - 4.00)
New course in the subject of biology.
BIOL 3000Cell Biology (3.00)
Offered
Spring 2012
Examines the fundamental principles of eukaryotic cell biology at the molecular level. Topics will include: structure and function of the plasma membrane, transport of small molecules, ions and macromolecular complexes across membranes, protein trafficking, the cytoskeleton, signal transduction pathways , and the control of cell division and cellular proliferation. Prerequisites: BIOL 2010, 2030, CHEM 1410, 1411, 1420, 1421.
BIOL 3010Genetics and Molecular Biology (4.00)
Examines the molecular nature of genes, gene function, the inheritance of genes, and the genetic basis of traits.  Major topics include Mendelian inheritance, mutation, linkage and recombination, gene regulation and interactions.  Required for all Biology majors. Prerequisite: BIOL 2010, 2020, CHEM 1410, 1420.
BIOL 3020Evolution and Ecology (3.00)
Offered
Spring 2012
Examines the mechanisms of evolutionary change, with an emphasis on the genetic and evolutionary principles needed to understand the diversification of life on earth.  Covers the ecology of individuals and population dynamics.  Major topics include the genetics and ecology of natural populations, adaptation, molecular evolution and macroevolution, and the application of evolutionary and ecological concepts to conservation biology.  Required for all Biology majors.     Prerequisite: BIOL 2010, 2020.
BIOL 3080Virology (3.00)
Presents an in-depth look at the molecular biology, pathogenesis and control of animal viruses. Small pox, influenza and HIV are used as model viruses for the analysis of viral replication mechanisms, viral genetics and the evolutionary relationship between the virus and its host. Epidemiology, transmission mechanisms, patterns of disease, and the societal impact of viruses are all discussed in terms of host/virus evolution. Prerequisite: BIOL 2010, 2020, CHEM 1410, 1420. First semester organic chemistry suggested, but not required.
BIOL 3090Biology of Infectious Disease (4.00)
Offered
Spring 2012
Emphasis is on the principles that govern disease biology, using examples from humans, plants and animals. Topics include: diversity and types of pathogens; mechanisms of transmission, pathogenicity, and resistance; epidemiology, population regulation, and extinction; disease origins; intracellular pathogens; disease and the evolution of genetic systems; and disease in biological control and conservation. Prerequisite: BIOL 2010, 2020.
BIOL 3120Microbiology in the Genomics Era (3.00)
Offered
Spring 2012
Microbes rule. In this course, we will explore how microbes rule the world and how genomics has revolutionized the way we study them. Fundamental principles of microbiology, together with the basics of genomics will be introduced. Topics include microbial cell structure, metabolism, genetics, microbial diversity and ecology, epidemiology, genome sequencing technologies and bioinformatics.
BIOL 3140Biology of Aging (3.00)
This interdisciplinary course will explore our current knowledge of the biology of aging in populations of plants and animals, including humans. Topics include demographic trends across species; analysis of why organisms age in the context of evolutionary theories; analysis of how organisms age in the context of cellular and physiological theories; and the genetic basis of longevity. Prerequisite: BIOL 2010, 2020.
BIOL 3150Microbiology Laboratory (3.00)
Offered
Spring 2012
An introduction to microorganisms and to basic microbiological principles through laboratory experimentation. Emphasis is on the structure, physiology and genetics of bacteria and bacterial viruses. Prerequisite: BIOL 2010 and 2030
BIOL 3170Introduction to Neurobiology (3.00)
Analyzes the concepts of general neurobiology, including basic electrophysiology and electrochemistry, origin of bioelectric potentials, sensory, motor, integrative and developmental neurobiology, and conceptual models of simple learning. Prerequisite: BIOL 2010, 2020.
BIOL 3180Introduction to Plant Biology (3.00)
Offered
Spring 2012
Examines basic principles of plant structure, development, classification, and physiology. Prerequisite: BIOL 2010, 2020.
BIOL 3200Basic Laboratory Investigations (3.00)
Students complete three of six 4-week laboratory modules offered; cell biology, molecular biology, genetics, development, behavior and evolution. Two of the six modules are offered concurrently in the first four weeks of the semester, two in the second four weeks, and two in the third; students complete one module in each four-week session. The learning objectives of each module are (1) to teach students the basic principles of problem solving through scientific investigation, and the written and oral skills needed to communicate results, and (2) to provide students with basic training in laboratory methodologies, techniques and protocols, and the use of laboratory instrumentation. Prerequisite: BIOL 2030, CHEM 1410, 1420.
BIOL 3210Cell, Molecular and Developmental Biology Lab (3.00)
Students will acquire basic training in cell culture, cell fractionation, microscopy, electrophoresis, spectrophotometry, chromatography, and immunological methods through a serries of lab investigatons. Contemporary molecular methods utilizing recombinant DNA and PCR will be included. Prerequisite: CHEM 1410-1420 or equivalent, BIOL 2010 (prerequisite) or BIOL 3000 (co-requisite), AP credit for BIOL 2010 is not sufficient.
BIOL 3220Genetics Evolution, and Behavior Laboratory (3.00)
Students apply contemporary laboratory methods, analytic tools, and experimental approaches in a series of investigations that explore important, basic concepts in the fields of genetics, evolution and behavior. Prerequisite: BIOL 2010 and 2020
BIOL 3230Animal Physiology (3.00)
Focuses on selected vertebrate organ systems; considers other systems where relevant. Prerequisite: BIOL 2010, 2020.
BIOL 3240Introduction to Immunology (3.00)
Offered
Spring 2012
Studies the genetics and cell biology of the vertebrate immune system, with a focus on adaptive immunity. Classic and current experimental systems are emphasized. Prerequisite: BIOL 2010, 2020.
BIOL 3250Introduction to Animal Behavior (3.00)
Offered
Spring 2012
An introduction to comparative studies of animal behavior from neuroethological and evolutionary prospectives. The first deals with proximate causes of behavior, with emphasis on motor, sensory and central aspects of the nervous system. The second deals with ultimate causes, with emphases on natural selection, natural history, and adaptive aspects of behavior. Prerequisite: BIOL 2010, 2020.
BIOL 3280Ornithology (3.00)
This course is an introduction to avian biology. Major topics include evolutionary history, genetics, anatomy and physiology, behavior and communication, reproduction and development, and ecology and conservation. Through the study of birds, the most diverse lineage of terrestrial vertebrates, students learn broadly applicable concepts of organismal biology and gain insight to the scientific investigation of integrated biological systems. Prerequisite: BIOL 2010, 2020.
BIOL 3290Ecology and Conservation of Fishes (3.00)
A laboratory course with a significant field component, an expanded version of a similar course taught at Mt. Lake Biological Station by the same instructor. Major topics of investigation center on the composition of freshwater fish assemblages and on the factors that influence distribution of fishes on multiple scales, from within stream reaches to among basins, including; physical habitat, water quality, and water flow; drainage histories and other zoogeographic processes; morphological, physiological, and life history characters of fishes; competition, predation and other biotic interactions; natural disturbance regimes; and anthropogenic impacts. The first portion of the semester provides an introduction to fish biology and systematics. Prerequisite: BIOL 201, 202, 204.
BIOL 3360Biological Therapy of Cancer (2.00)
Offered
Spring 2012
This seminar course revolves around weekly two-hour student-led presentations of primary literature in the field of cancer therapy using novel approaches including immunotherapies. Objectives include providing the student with significant exposure to primary literature and the development of critical thinking skills. Prerequisites: Biology 3240
BIOL 3400Functional Morphology of Vertebrates (4.00)
Comparative investigations of functional morphology across major vertebrate lineages.  Lectures are organized into three units; 1) evolutionary history and patterns of development, 2) integumentary, skeletal and muscular systems, and 3) sensory systems, and neural and endocrine integrations.  Topics of investigation focus on biomechanical and physiological performance of biological structures, from cells to organ systems, and on the origins and diversification of form-function complexes among vertebrates.  Lab exercises include dissections, observation of prepared specimens and other material, and modeling/simulation of biomechanical systems.  This course serves as a 3000-level lab requirement for either the B.A. or B.S. in biology. Prerequisite: BIOL 2010, 2020, 2040.
BIOL 3440Endocrinology (3.00)
Endocrinology
BIOL 3450Biodiversity and Conservation (3.00)
Introduction to the fundamental principles of conservation biology (e.g., global species numbers, value of biodiversity, causes of extinction, genetic diversity, island biogeography, priority setting) and current topics of debate (including zoo versus field conservation, effects of global change on species extinction). Conservation case studies will allow students to judge the relevance of biological theory to practical problems in conservation. Prerequisite: BIOL 2010, 2020 or EVSC 3200.
BIOL 3500Field Biology (1.00 - 3.00)
Application of field techniques for biological studies. Cross-listed with EVSC 3660. Prerequisite: BIOL 2040 or instructor permission.
BIOL 3510Field Biology at Mountain Lake Biological Station (1.00 - 4.00)
Field experiential courses in evolution, ecology, behavior and biology taught at the Biology Department's Mountain Lake Biological Station (MLBS), a field research and teaching facility located in southwestern Virginia. Students may enroll for more than one section as each section is a specialized topic. Prerequisites: BIOL 2010, 2020, 2030, 2040 or AP credit or equivalent.
BIOL 3559New Course in Biology (1.00 - 4.00)
New course in the subject of biology.
BIOL 3585Selected Topics in Biology (1.00 - 3.00)
Offered
Spring 2012
Tutorial or seminar course that allows intensive study of the literature in a particular area of biology under the guidance of a Biology faculty member.
BIOL 3660Marine Biology and Coral Reef Ecology in San Salvador (4.00)
The course will introduce students to the plants and animals found in the marine and terrestrial environments of the Caribbean and their adaptations in the context of community ecology. Fishes, invertebrates, reptiles and marine algae will be the major groups encountered and snorkeling will be used for observation and collection. Lectures, labs, discussions, and extensive field work included, plus an independent research project. Prerequisites: BIOL 2010, 2020, 2040, or EVSC 3200, or permission of the instructor.
BIOL 3665Tropical Ecology and Conservation in Belize (3.00)
This course is an introduction to the organisms and ecosystems of Belize, including fresh water, marine and terrestrial examples. Special emphasis will be placed on the interactions of the ecosystem components and on the conservation of specific ecosystems and locales. Prerequisites: The completed sequence BIOL 2010, 2020, 2030, 2040, or their equivalents, or permission of instructor.
BIOL 3950Recent Advances in Biology (3.00)
Consists of weekly lecture/discussion sessions on recent advances in biology as reported through articles in the current literature and in research seminars presented within the University. Required for DMP students. Prerequisite: Instructor permission. Note: All lecture courses at the 4000 level and above, have the prerequisite of at least one of the three core courses (3000-3020). All laboratory courses have a prerequisite of a 3000-level lab; unless a specific prerequisite lab is specified, any 3000-level lab will satisfy this prerequisite.
BIOL 4000Laboratory in Molecular Biology (3.00)
Laboratory introduction to fundamental molecular techniques used in many biological research laboratories. Includes basic aseptic technique, isolation and manipulation of genetic material, electrophoresis, cloning, gene library construction/screening, Southern blot analysis, and PCR techniques. Lecture and open laboratory. Prerequisite: BIOL 3210.
BIOL 4020Ecology and Evolutionary Genetics (3.00)
Examines the mechanisms of evolution within populations, molecular evolution, and the process of speciation. Topics include genetics of adaptation and speciation, natural selection, and the processes influencing the evolution of genes and genomes at the molecular level. Prerequisite: BIOL 3010.
BIOL 4030Evolutionary Biology Laboratory (3.00)
Analyzes important concepts in evolution, and experimental techniques used in evolutionary ecology and population genetics field research, experimental populations, molecular markers, phylogenetic reconstruction including aspects of experimental design and statistical analysis of data. Includes a weekend field trip to Mountain Lake Biological Station. Prerequisite: BIOL 3010, MATH 1310.
BIOL 4040Laboratory in Cell Biology (3.00)
Offered
Spring 2012
Introduces the theory and practice of important laboratory techniques used in cell biology research. Studies techniques such as microscopy, electrophoresis, and cell culture. One laboratory lecture and one afternoon laboratory per week. Prerequisite: BIOL 3000.
BIOL 4050Developmental Biology (3.00)
Explores the processes of embryonic development in plants and animals, emphasizing the experimental basis of contemporary knowledge in embryo-genesis, morphogenesis and in cell and tissue differentiation. Lecture and occasional evening discussions. Prerequisite: BIOL 3010.
BIOL 4070Developmental Biology Laboratory (3.00)
This course offers laboratory experience illustrating a number of principles and processes in the early development of both plants and animals. Laboratory work includes the use of basic microscopy and imaging techniques to study embryonic processes such as fertilization, oogenesis, gastrulation, and tissue interactions. Students will learn basic molecular techniques used to study gene expression and patterning in the embryo. Students will also develop skills in observation, experimental design, and data presentation. Prerequisite: BIOL 3210.
BIOL 4080Neuronal Organization of Behavior (3.00)
Lectures and discussions addressing behavior and sensory processing from the perspective of the neural elements involved. Topics include neuronal substrates (anatomical and physiological) of startle reflexes, locomotory behaviors, visual and auditory processing, echolocation mechanisms, calling song recognition, and the neuronal organization underlying some types of functional plasticity. Prerequisite: BIOL 3170 or equivalent.
BIOL 4100Management of Forest Ecosystems (4.00)
Studies processes in forest ecosystems which effect management decisions. Emphasizes the interactions between the physiological processes of plants & system-level functions such as the cycling of nutrients & the flow of energy and water. Examples of current & projected uses of forest systems are discussed throughout, including harvesting for fiber & energy, and the preservation of forests as water purification and air pollution control systems. Prerequisites: EVSC 3200 or equivalent exposure to basic ecology is recommended.
BIOL 4110Genetics Laboratory (3.00)
A research experience in developmental genetics that uses Drosophila melanogaster as a model system. Prerequisite: BIOL 3010.
BIOL 4120When Good Cells Go Bad (3.00)
This course will cover topics related to major neurodegenerative diseases including Multiple Sclerosis (MS), Muscular Dystrophy (MD), Peripheral Nerve Sheath Tumor (Neurofibrosarcoma) and Malignant peripheral nerve sheath tumor (MPNST). Topics related to pathology and molecular mechanism of diseases, possible drug discovery targets, and therapeutic discovery approaches will be emphasized. Prerequisites: BIOL 3000, BIOL 3010.
BIOL 4130Population Ecology and Conservation Biology (3.00)
The mathematical foundations of population dynamics and species interactions as applied to population and community ecology and problems in conservation biology. Prerequisite: BIOL 3020 or EVSC 3200, and a course in calculus.
BIOL 4160Functional Genomics Lab (3.00)
The course serves as a hands-on introduction to genomics, proteomics, and bioinformatics. Topics that will be covered during the lectures and computer labs of this course include genome sequence analysis, genome expression analysis, and genomic circuits analysis. Prerequisites: BIOL 3010.
BIOL 4170Cellular Neurobiology (3.00)
Explores a cellular approach to the study of the nervous system. Topics include the structure and function of ionic channels in cell membranes; the electrochemical basis of the cell resting potential; the generation and conduction of nerve impulses; and synaptic transmissions. Three lecture and demonstration/discussion credits. Class meetings include lectures, discussion, student presentations, and computer simulations of neurophysiology with NeuroDynamix. Prerequisite: BIOL 3170 or equivalent; BIOL 3000.
BIOL 4180Behavioral Ecology (3.00)
Behavioral ecology explores the evolutionary analysis and explanations for the diversity of animal behavior, including foraging decisions, altruism, cooperation, mate choice, group living, parental care and range of other sociobiological phenomena. Prereuaisite: BIOL 3020.
BIOL 4190Biological Clocks (3.00)
Introduces biological timekeeping as used by organisms for controlling diverse processes, including sleep-wakefulness cycles, photoperiodic induction and regression, locomotor rhythmicity, eclosion rhythmicity, and the use of the biological clock in orientation and navigation. Prerequisite: BIOL 3000, 3010.
BIOL 4215Microbial Genomics (3.00)
Explores how genomics has revolutionized every aspect of microbiology. Fundamental principles of microbiology, together with the basics of genomics will be introduced. Topics include microbial cell structure, metabolism, genetics, microbial diversity and ecology, epidemiology, genome sequencing technologies and comparative genomics. Prerequisites: BIOL 3000 and BIOL 3010
BIOL 4220Introduction to Systems Biology (3.00)
An introduction to a new research paradigm that focuses on the systematic study of complex interactions at the molecular, network and genomic level. This course will review state-of-the-art high throughput techniques and modeling methods used to obtain, integrate and analyze complex data from biological systems. This course will be a combination of text based lectures and discussions of the current literature pertinent to Systems Biology. Prerequisites: BIOL 3010. Also recommended is BIOL 3000
BIOL 4240History and Philosophy of Biology (3.00)
Offered
Spring 2012
This course will give an overview of the major conceptual and experimental advances in Biology. It will explore the relationships of Biology to mathematics and physical sciences and explore philosophical issues relevant to science in general, Biology in particular. Prerequisite: 25 credits of Math or Science
BIOL 4250Human Genetics (3.00)
Offered
Spring 2012
Focuses on the fundamental knowledge about organization, expression, and inheritance of the human genome. Reviews classical Mendelian genetics and human genetic (pedigree) analysis. Emphasizes understanding human genetics in molecular terms. Includes gene mapping procedures, methodologies for identifying genes responsible for inherited diseases, the molecular basis of several mutant (diseased) states, the human genome project, and discussions about genetic screening and gene therapy. Prerequisite: BIOL 3010.
BIOL 4260Cellular Mechanisms (3.00)
Offered
Spring 2012
The course will explore topics in cell biology that underlie mechanisms of human health and disease. Specific topics will depend on interest, but may include cancer and metastasis, metabolic syndromes or pathogen-host interactions (among others). Course materials will be research and review articles from the relevant primary literature. Students are expected to engage in and lead thoughtful discussions of assigned readings ~75% of the class time. Prerequisites: Biol 3000 and Biol 3010
BIOL 4270Animal Behavior Laboratory (3.00)
Provides direct experience in approaches used to study animal behavior. Each lab concentrates on a particular aspect of behavior. Student experiments relate to central nervous systems; sensory perception; sign stimuli, feeding behavior; social behavior; reproductive behavior; biological timing; and animal observation in the laboratory and field. Prerequisite: BIOL 3250 recommended.
BIOL 4290Hormones and Behavior (3.00)
The aspects of hormones (primarialy sex and stress) on vertebrate behavior. Prerequisites: Any two of BIOL 3000, 3010, 3020 or equivalent.
BIOL 4310Sensory Biology (3.00)
Offered
Spring 2012
Examines the anatomy, physiology, and molecular biology of many sensory modalities such as vision, audition, such chemosensation. General features of sensory systems are described. Prerequisite: BIOL 3170
BIOL 4320Signal Transduction: How cells talk to each other (3.00)
Offered
Spring 2012
This advanced undergraduate course explores how cells communicate with each other and respond to their environment. This area of biology is referred to as signal transduction and is the basis for most if not all normal and disease processes in humans. Therefore, significant time is spent on defining archetypal signaling modules that all cells use to receive and communicate information to and from their environment. Prerequisites: BIOL 3000 & BIOL 3010
BIOL 4330Wiring the Brain (3.00)
This course will cover the current state of knowledge for how neurons form connections in the brain. The course will initially focus on how relatively simple model systems have provided the critical clues as to how specific synaptic connections form. This will be followed by a discussion of how this knowledge can be applied to the understanding and treatment of human neural disorders. About a quarter of the course will be standard lectures and the remainder student-led discussion of primary literature. Prerequisites: BIOL 3000 and BIOL 3010; BIOL 3170 or Psych 2200.
BIOL 4340Experimental Foundations of Neurobiology (3.00)
The course content will focus on three areas of neurobiological research: conduction of the nervous impulse, sensory physiology, and synaptic physiology. Prerequisites: BIOL 3170 or an equivalent course
BIOL 4350Metabolic Systems (3.00)
Examination of molecular mechanisms involved in metabolic regulation in mammals. Prerequiste: BIOL 3000, 3010.
BIOL 4370Epigenetics (3.00)
Explores the emerging science, Epigenetics. Topics include epigenetics in model organisms and molecular mechanisms such as the Polycomb and Trithorax Group proteins, histone modifications and variants, dosage compensation, DNA methylation, nuclear reprogramming and stem cell pluripotency. Prerequisites: Genetics and Molecular Biology, Cell Biology and Biochemistry strongly recomended.
BIOL 4410Molecular Biology and Genetics (3.00)
A survey of contemporary issues in molecular biology and genetics. The course will be a combination of text based lectures and discussions of the current literature emphasizing the development of critical reading techniques. Prerequisites: BIOL 3000, 3010
BIOL 4480Structure and Function of Complex Macromolecules (3.00)
Exploration, in depth, of principles underlying protein and nucleic acid structures and the techniques used to determine those structures. Prerequisite: BIOL 3000, biochemistry, or two semesters of organic chemistry.
BIOL 4490Neural Systems and Behavior (3.00)
Offered
Spring 2012
This is an upper level lecture/discussion course for students interested in pursuing additional studies in neurobiology beyond the introductory level. Prerequisites: BIOL 3170 and BIOL 3250.
BIOL 4510Field Biology at Mountain Lake Biological Station (1.00 - 4.00)
Field experiential courses in evolution, ecology, behavior and biology taught at the Biology Department's Mountain Lake Biological Station (MLBS), a field research and teaching facility located in southwestern Virginia. Students may enroll for more than one section as each section is a specialized topic. Prerequisites: BIOL 3020 Evolution & Ecology or equivalent.
BIOL 4559New Course in Biology (1.00 - 4.00)
Offered
Spring 2012
New course in the subject of biology.
BIOL 4585Selected Topics Course (1.00 - 3.00)
Offered
Spring 2012
Tutorial or seminar course that allows intensive study of the literature in a particular area of Biology under the guidance of a Biology faculty member
BIOL 4650Molecular Biology of Human Disease (3.00)
This course addresses molecular mechanisms of gene regulation and cell division in the context of identifying new therapeutic targets and to explore novel treatment options for infections and fenetic diseases. Prerequisites: BIOL 3000, BIOL 3010.
BIOL 4810Distinguished Major Seminar in Biological Research I (2.00)
Two-hour, weekly discussion of recent advances in biology; attend biology seminars, interact with seminar speakers, explore the philosophy and practice of science, and learn skills in oral and written research presentation. Prerequisite: Fourth-year DMP in Biology.
BIOL 4820Distinguished Major Seminar in Biological Research II (2.00)
Offered
Spring 2012
Two-hour, weekly discussion of recent advances in biology; attend biology seminars, interact with seminar speakers, explore the philosophy and practice of science, and learn skills in oral and written research presentation. Prerequisite: Fourth-year DMP in Biology.
BIOL 4850Seminar in Environmental and Conservation Biology (2.00)
Offered
Spring 2012
In-depth investigation of current research and practice in environmental and biological conservation. Format will include the discussion of fundamental and recent readings in conservation and guest speakers from the local scientific and conservation communities. Cross-listed with EVSC 4142.  Prerequisite: BIOL 3010 or EVSC 3200, and a course in conservation biology (e.g., BIOL 3450, BIOL 4130, or EVSC 2220).
BIOL 4911Independent Research 1 (2.00)
Offered
Spring 2012
Independent research for qualified undergraduates under the direction of a faculty member. Prerequisite: Instructor permission.
BIOL 4912Independent Research II (2.00)
Offered
Spring 2012
Independent research for qualified undergraduates under the direction of a faculty member. Prerequisite: Instructor permission and BIOL 4911.
BIOL 4913Independent Research III (2.00)
Offered
Spring 2012
Independent research for qualified undergraduates under the direction of a faculty member. Prerequisite: Instructor permission and BIOL 4912.
BIOL 4914Independent Research IV (2.00)
Offered
Spring 2012
Independent research for qualified undergraduates under the direction of a faculty member. Prerequisites: Instructor Permission and BIOL 4913.
BIOL 4915Independent Research V (2.00)
Offered
Spring 2012
Independent research for qualified undergraduates under the direction of a faculty member. Prerequisite: Instructor permission and BIOL 4914.
BIOL 4916Independent Research VI (2.00)
Offered
Spring 2012
Independent research for qualified undergraduates under the direction of a faculty member. Prerequisite: instructor permission and BIOL 4915.
BIOL 4917Independent Research VII (2.00)
Offered
Spring 2012
Independent research under the guidance of a departmental faculty member. Prerequisite: Instructor permission and BIOL 4916.
BIOL 4918Independent Research VIII (2.00)
Offered
Spring 2012
Independent research under the guidance of a departmental faculty member. Prerequisite: Instructor Permission and BIOL 4917
BIOL 4993Independent Study In Biology (1.00 - 3.00)
Offered
Spring 2012
Tutorial or seminar course that allows intensive study of the literature in a particular area of biology under the guidance of a Biology faculty member.
BIOL 4994Independent Study in Biology (1.00 - 3.00)
Offered
Spring 2012
Independent study for qualified undergraduates under the direction of a faculty member. Prerequisite: Instructor permission and BIOL 4993.
BIOL 5010Biochemistry (4.00)
Structure and function of the major constituents of cells (proteins, nucleic acids, lipids and carbohydrates) and the relationship to cellular metabolism and self-replication. Lectures and discussion. Prerequisite: BIOL 3000; organic chemistry.
BIOL 5070Practical Aspects of Light Microscopy in the Biological Sciences (3.00)
Practical usage of various microscopy imaging methodologies to study the morphology and cellular function in various biological systems from single cell to single molecule in cells and tissues. Topics include basics theory of microscopy, imaging and image analysis to solve various biological questions, fluorophore labeling, technical and hands on training on various microscopy techniques applied in different biological and biomedical investigations. Lectures, discussion, student presentations and laboratory.
BIOL 5080Developmental Mechanisms (3.00)
Offered
Spring 2012
Analyzes the cellular and molecular basis of developmental phenomena, reviewing both classical foundations and recent discoveries. Lectures focus on the major developmental systems used for analysis of embryogenesis (e.g., mouse, frog, and fly) and concentrate on several themes that pervade modern research in this area (e.g., signal transduction mechanisms). Readings are from the primary research literature, supplemented by textbook assignments. Lectures and discussion. Prerequisite: BIOL 3000 and BIOL 3010 or equivalent.
BIOL 5090Current Topics in Plant Molecular Biology (2.00)
Discussion of current literature and selected topics on the biochemical and molecular genetic basis for plant cellular growth and differentiation. Weekly readings and student presentations. Prerequisite: Instructor permission.
BIOL 5120Comparative Biochemistry (3.00)
Examines the biochemical adaptations that have arisen in organisms in response to physiological demands. Topics are drawn from recent advances made in elucidating molecular mechanisms of metabolic regulation. Prerequisite: Organic chemistry; BIOL 5010; instructor permission.
BIOL 5170Molecular Genetics (4.00)
Molecular Genetics
BIOL 5250Ecological Issues in Global Change (4.00)
Offered
Spring 2012
Introduces development and application of theoretical constructs and mathematical models for projecting the dynamics of terrestrial ecosystems to large scale changes in the environment. Prerequisites: EVSC 3200 or equivalent, one year of college calculus, or instructor permission.
BIOL 5370Epidemiology and Evolution of Infections Disease (3.00)
Discussion of current literature and selected topics on theoretical and empirical studies of disease dynamics and genetic change in plant, animal and human populations. There will be lectures, weekly readings, plus a student project and presentation. Prerequisite: Biol 3090 or Instructor Permission.
BIOL 5460Molecular Neuroscience (4.00)
Covers contributions of molecular and molecular genetic studies to neural development and function. Utilizes primary literature and literature reviews, emphasizing critical reading skills and analysis of molecular data. Prerequisite: BIOL 3000, 3010.
BIOL 5995Biological Research at Mountain Lake Biological Station (1.00 - 4.00)
Biology Research at Mountain Lake Biological Station is designed for students participating in the Mountain Lake Biological Station summer Master's Degree Program.
BIOL 6559New Course in Biology (1.00 - 4.00)
New course in the subject of biology.
BIOL 7010Macroevolution (3.00)
Survey of new problems and approaches to large-scale (above the species level) ecological and evolutionary patterns. The course will emphasize modern conceptual issues and methodological advances. Laboratory work will involve computer applications in systematics and statistics. Prerequisite: BIOL 3010.
BIOL 7020Ecological and Evolutionary Genetics (3.00)
Examines the mechanisms of evolution within populations, molecular evolution, and the process of speculation. Topics include genetics of adaptation and speciation, natural selection, and the processes influencing the evolution of genes and genomes at the molecular level. Prerequisites: BIOL 3010
BIOL 7120When Good Cells Go Bad (3.00)
This course will cover topics related to major neurodegenerative diseases including Multiple Sclerosis (MS), Muscular Dystrophy (MD), Peripheral Nerve Sheath Tumor (Neurofibrosarcoma) and Malignant peripheral nerve sheath tumor (MPNST). Topics related to pathology and molecular mechanism of diseases, possible drug discovery targets, and therapeutic discovery approaches will be emphasized.
BIOL 7130Population Ecology and Conservation Biology (4.00)
The natural history and mathematical theory of population dynamics, species interactions and life history evolution. Lectures emphasize theory and experimental tests; class discussions focuses on applications to conservation of plant and animal populations.
BIOL 7160Functional Genomics (3.00)
The first half of the course serves as an introduction to basic bioinformatics and genomics. The second half of the course concentrates on the rapidly evolving discipline of Functional Genomics, which takes advantage of the dramatic increase in the amount.
BIOL 7170Neurophysiology (4.00)
Analyzes nerve and muscle function. Includes Nernst and Goldman theories of biological membrane potentials; Hodgkin-Huxley theory of the nerve impulse; passive electrical properties of nerve and muscle membranes; analysis of function in restricted neural networks; and mechanisms in neuronal development.
BIOL 7180Behavioral Ecology (3.00)
Behavioral ecology explores the evolutionary analysis and explanations for the diversity of animal behavior, including foraging decisions, altruism, cooperation, mate choice, group living, parental care and range of other sociobiological phenomena.
BIOL 7190Biological Clocks (3.00)
Introduces biological timekeeping as used by organisms for controlling diverse processes, including sleep-wakefulness cycles, photoperiodic induction and regression, locomotor rhythmicity, eclosion rhythmicity, and the use of the biological clock in orientation and navigation.
BIOL 7215Microbial Genomics (3.00)
Microbes rule. In this course, we will explore how microbes rule the world and how genomics has revolutionized the way we study them. In the firs half of the course, fundamental principles of microbiology will be introduced. In the second half of the course, we will learn some basic concepts of genomics with an emphasis on the current topics in the microbial genomics field.
BIOL 7220Introduction to Systems Biology (3.00)
An introduction to a new research paradigm that focuses on the systematic study of complex interactions at the molecular, network and genomic level. This course will review state-of-the-art high throughput techniques and modeling methods used to obtain, integrate and analyze complex data from biological systems. This course will be a combination of text based lectures and discussions of the current literature pertinent to Systems Biology.
BIOL 7230Animal Physiology (3.00)
Uses diverse examples to identify general principles in physiological adaptation of animals to environmental challenges.
BIOL 7310Sensory Neurobiology (3.00)
Offered
Spring 2012
This two-lectures-per-week course explores the basic principles of sensory neurobiology. The course consists of four modules. Each module represents one of the senses and consists of an introductory lecture, one or several lectures that will delve into the details of that sense, a current topic lecture on some recent finding, and finally, a guest lecture from a UVa researcher. Prerequisites: Instructor Permission.
BIOL 7320Signal Transduction: How cells talk to each other (3.00)
Offered
Spring 2012
This advanced undergraduate course explores how cells communicate with each other and respond to their environment. This area of biology is referred to as signal transduction and is the basis for most if not all normal and disease processes in humans. Therefore, significant time is spent on defining archetypal signaling modules that all cells use to receive and communicate information to and from their environment.
BIOL 7350Metabolic Systems (3.00)
Examination of molecular mechanisms involved in metabolic regulation in mammals
BIOL 7370Epigenetics (3.00)
Explores the emerging science, Epigenetics. Topics include epigenetics in model organisms and molecular mechanisms such as the Polycomb and Trithorax Group proteins, histone modifications and variants, dosage compensation, DNA methylation, nuclear reprogramming and stem cell pluripotency.
BIOL 7410Molecular Biology (3.00)
A survey of contemporary issues in molecular biology and genetics. The course will be a combination of text-based lectures and discussions of the current literature emphasizing the development of critical reading techniques. This course is meant for advanced undergraduate and graduate students. Background material will be from Molecular Biology of the Gene, 5th ed, Watson et al, Pearson/Benj Cummings, More recent material will be from current literature.
BIOL 7510Field Biology at Mountain Lake Biological Station (1.00 - 4.00)
Field experiential courses in evolution, ecology, behavior and biology taught at the Biology Department's Mountain Lake Biological Station (MLBS), a field research and teaching facility located in southwestern Virginia. Students may enroll for more than one section, as each section is a specialized topic.
BIOL 7559New Course in Biology (1.00 - 4.00)
Offered
Spring 2012
New course in the subject of biology.
BIOL 7850Seminar in Environmental and Conservation Biology (2.00)
In-depth investigation of current research and practice in environmental and biological conservation. Format will include the discussion of fundamental and recent readings in conservation and guest speakers from the local scientific and conservation communities.
BIOL 7993Independent Study in Biology (1.00 - 4.00)
Offered
Spring 2012
A biology faculty member supervises and approves all components of this course, designating the number of credits to be earned prior to enrollment. Students successfully complete one or more courses offered by the Department of Biology at the 300 level or above and, for each course, write a 10-page (minimum) paper on a relevant topic.
BIOL 8010Colloquium in Developmental Biology (2.00)
Offered
Spring 2012
A weekly conference in which students present reports covering various aspects of development. May be repeated for credit. Prerequisite: Instructor permission.
BIOL 8020Colloquium in Physiology (2.00)
A weekly conference in which students present reports covering various aspects of physiology. May be repeated for credit. Prerequisite: Instructor permission.
BIOL 8030Colloquium in Genetics (2.00)
A weekly conference in which students present reports covering aspects of genetics. May be repeated for credit. Prerequisite: Instructor permission.
BIOL 8040Colloquium in Biology (2.00)
A weekly conference in which students present reports covering various topics that cross development, genetics, and physiology. May be repeated for credit. Prerequisite: Instructor permission.
BIOL 8060Colloquium in Circadian Biology (2.00)
Offered
Spring 2012
Readings and two-hour student seminar preparations focusing on recent research and primary literature in circadian biology. Prerequisites: Instructor Permission
BIOL 8070Colloquium in Population Biology (2.00)
Offered
Spring 2012
A weekly conference arranged around a current topic. May be repeated for credit. Prerequisite: Instructor permission.
BIOL 8140Developmental Genetics (2.00)
Analyzes the role of genes in development and an examination of the idea of differential gene action during development.
BIOL 8200Structure and Regulation of Eukaryotic Genes (3.00)
Studies the structure, regulation, and evolution of eukaryotic genes, reviewing current literature and ideas in this field. Prerequisite: Instructor permission.
BIOL 8250Scientific Presentations and Papers (1.00)
Oral presentations and analysis of research articles. Required of all first-year graduate students in biology.
BIOL 8270First Year Introduction to Research (1.00)
Weekly seminar to orient new graduate students in the Department of Biology, with emphasis on identifying intra- and extra-departmental resources for thesis or dissertation research. Environmental health and safety regulations will also be discussed. Biology faculty, university staff, and visiting scientists will contribute to the weekly discussion.
BIOL 8490Advanced Drosophila Genetics (2.00)
Examines genetic techniques available in Drosophila: segregation and use of translocation heterozygotes in the generation of segmental anueploids; segregation and use of compound chromosomes, including their use in the half-tetrad analysis of gene conversion events; methods for making mosaics; methods for P-element induced mutagenesis, including site directed mutagenesis; P-element mediated transformation; and using enhancer traps. Prerequisite: BIOL 3010 or equivalent.
BIOL 8510Field Biology at Mountain Lake Biological Station (1.00 - 4.00)
Field experiential courses in evolution, ecology, behavior and biology taught at the Biology Department's Mountain Lake Biological Station (MLBS), a field research and teaching facility located in southwestern Virginia. Students may enroll for more than one section as each section is a specialized topic.
BIOL 8559New Course in Biology (1.00 - 4.00)
New course in the subject of biology.
BIOL 8800Selected Topics in Genetics (2.00)
A weekly conference with reports from recent literature on genes and gene action.
BIOL 8810Selected Topics in Evolution (2.00)
A weekly seminar on current problems with reports from recent literature. Prerequisite: Instructor permission.
BIOL 8820Selected Topics in Developmental Biology (2.00)
A discussion of current problems. Prerequisite: Instructor permission.
BIOL 8840Selected Topics in Physiology (2.00)
A discussion of current problems.
BIOL 8850Selected Topics in Molecular Genetics (2.00)
A weekly seminar on current problems with reports from recent literature.
BIOL 8860Selected Topics in Cell Biology (2.00)
A discussion of current problems. Prerequisite: Instructor permission.
BIOL 8870Selected Topics in Developmental Genetics (1.00 - 2.00)
Offered
Spring 2012
A discussion of current problems. Prerequisite: Instructor permission.
BIOL 8880Selected Topics in Biochemistry (2.00)
A discussion of current problems. Prerequisite: Instructor permission.
BIOL 8900Selected Topics in Developmental Botany (3.00)
A discussion of current problems. Prerequisite: Instructor permission.
BIOL 8998Non-Topical Research, Preparation for Research (3.00 - 12.00)
For master's research, taken before a thesis director has been selected.
BIOL 8999Non-Topical Research (3.00 - 12.00)
Offered
Spring 2012
For master's thesis, taken under the supervision of a thesis director.
BIOL 9010Research in Genetic Development (1.00 - 12.00)
Research in Genetic Development
BIOL 9030Research in Yeast Genetics (1.00 - 12.00)
Research in Yeast Genetics
BIOL 9040Research in Yeast Genetics (1.00 - 12.00)
Research in Yeast Genetics.
BIOL 9070Research in Molecular Genetics (1.00 - 12.00)
Research in Molecular Genetics
BIOL 9090Research in Developmental Biology (1.00 - 12.00)
Research in Developmental Biology
BIOL 9110Research on Protein Structure (1.00 - 12.00)
Research on Protein Structure
BIOL 9150Research in Biochemistry (1.00 - 12.00)
Research in Biochemistry
BIOL 9230Research in Neuroethology of Electric Fish (1.00 - 12.00)
Research in Neuroethology of Electric Fish
BIOL 9250Research in Population Biology (1.00 - 12.00)
Research in Population Biology
BIOL 9270Research in Plant Physiology (1.00 - 12.00)
Research in Plant Physiology
BIOL 9290Research in Plant Biology (1.00 - 12.00)
Research in Plant Biology
BIOL 9330Research in the Circadian Organization of Vertebrates (1.00 - 12.00)
Research in the Circadian Organization of Vertebrates
BIOL 9350Research in Cell Structure and Function (1.00 - 12.00)
Research in Cell Structure and Function
BIOL 9370Research in Gene Expression during Development (1.00 - 12.00)
Research in Gene Expression during Development
BIOL 9390Research in Behavior Neuroendocrinology (1.00 - 12.00)
Research in Behavior Neuroendocrinology
BIOL 9410Yeast Morphogenesis (1.00 - 12.00)
Research in Yeast Morphogenesis
BIOL 9450Research in Evolutionary Biology (1.00 - 12.00)
Research in Evolutionary Biology
BIOL 9470Research in Neurophysiology and Developmental Neurobiology (1.00 - 12.00)
Research in Neurophysiology and Developmental Neurobiology
BIOL 9559New Course in Biology (1.00 - 4.00)
New course in the subject of biology.
BIOL 9600Research in Cell Structure and Function (1.00 - 12.00)
Research in Cell Structure and Function
BIOL 9630Research in Drosophila Neurobiology (1.00 - 12.00)
Research in Drosophila Neurobiology
BIOL 9650Research in Ecological Genetics (1.00 - 12.00)
Research in Ecological Genetics
BIOL 9670Research in Animal Cell Growth (1.00 - 12.00)
Research in Animal Cell Growth
BIOL 9770Research in Molecular Aspects of Development (1.00 - 12.00)
Research in Molecular Aspects of Development
BIOL 9790Research in Development and Function of Neuronal Networks (1.00 - 12.00)
Research in Development and Function of Neuronal Networks
BIOL 9810Research in Developmental Genetics and Morphogenesis (1.00 - 12.00)
Research in Developmental Genetics and Morphogenesis
BIOL 9830Research in the Neurophysiological Basis of Circadian Rhythms (1.00 - 12.00)
Research in the Neurophysiological Basis of Circadian Rhythms
BIOL 9910Rotation Research (4.00)
An exposure to the working techniques and interactions of the modern Biological Laboratory. Required of all first-year biology graduate students.
BIOL 9920Rotation Research (4.00)
Offered
Spring 2012
An exposure to the working techniques and interactions of the modern Biological Laboratory. Required of all first-year biology graduate students.
BIOL 9995Topical Research in Biology (1.00 - 12.00)
Offered
Spring 2012
Independent research with a member of the Biology faculty in preparation for thesis or dissertation research.
BIOL 9998Non-Topical Research, Preparation for Doctoral Research (1.00 - 12.00)
Offered
Spring 2012
For doctoral research, taken before a dissertation director has been selected.
BIOL 9999Non-Topical Research (1.00 - 12.00)
Offered
Spring 2012
For doctoral dissertation, taken under the supervision of a dissertation director.
Human Biology
HBIO 4559New Course Human Biology (1.00 - 4.00)
New Course in the subject of human biology.
HBIO 4810Capstone Seminar in Human Biology (2.00)
A weekly seminar co-organized by participating faculty to integrate students' independent research and coursework with contemporary issues at the intersection of biology, the humanities and social sciences. Students will have the opportunity to present their ongoing research and meet with outside speakers. This course will be taken in the fourth year. Prerequisite: DMP in Human Biology.
HBIO 4820Seminar and Thesis in Human Biology (2.00)
Offered
Spring 2012
A weekly discussion and workshop co-organized by participating faculty to provide guidance and advice to students on completing their research or independent study and writing their thesis. Occasional seminars and opportunities to meet outside speakers will continue in this semester. This course will be taken in the fourth year. Prerequisite: DMP in Human Biology.
HBIO 4950Independent Research for Human Biology (1.00)
Independent research/independent study under the guidance of a primary mentor within the College of Arts and Sciences. Prerequisite: DMP in Human Biology.
HBIO 4960Independent Research for Human Biology (1.00)
Offered
Spring 2012
Independent research/independent study under the guidance of a primary mentor within the College of Arts and Sciences. Prerequisite: DMP in Human Biology.
HBIO 4998Thesis Research in Human Biology (1.00)
Independent research/independent study under the guidance of a primary mentor within the College of Arts and Sciences. Research/study forms the basis for the DMP thesis to be submitted at the end of the fourth year. This course must be taken in the first semester of the fourth year and should encompass the majority of the research for the thesis. Prerequisite: First-semester fourth-year DMP in Human Biology.
HBIO 4999Thesis Research in Human Biology (1.00)
Offered
Spring 2012
Independent research/independent study under the guidance of a primary mentor within the College of Arts and Sciences. Research/study forms the basis for the DMP thesis to be submitted at the end of the fourth year. This course must be taken following completion of HBIO 497 and represents completion of all aspects of the research project. Prerequisite: HBIO 497.